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A systematic, large-scale resequencing screen of X-chromosome coding exons in mental retardation

Identifieur interne : 008484 ( Main/Exploration ); précédent : 008483; suivant : 008485

A systematic, large-scale resequencing screen of X-chromosome coding exons in mental retardation

Auteurs : Patrick S. Tarpey [Royaume-Uni, Australie] ; Raffaella Smith [Royaume-Uni] ; Erin Pleasance [Royaume-Uni] ; Annabel Whibley [Royaume-Uni] ; Sarah Edkins [Royaume-Uni] ; Claire Hardy [Royaume-Uni] ; Sarah O'Meara [Royaume-Uni] ; Calli Latimer [Royaume-Uni] ; Ed Dicks [Royaume-Uni] ; Andrew Menzies [Royaume-Uni] ; Phil Stephens [Royaume-Uni] ; Matt Blow [Royaume-Uni] ; Chris Greenman [Royaume-Uni] ; YALI XUE [Royaume-Uni] ; Chris Tyler-Smith [Royaume-Uni] ; Deborah Thompson [Royaume-Uni] ; Kristian Gray [Royaume-Uni] ; Jenny Andrews [Royaume-Uni] ; Syd Barthorpe [Royaume-Uni] ; Gemma Buck [Royaume-Uni] ; Jennifer Cole [Royaume-Uni] ; Rebecca Dunmore [Royaume-Uni] ; David Jones [Royaume-Uni] ; Mark Maddison [Royaume-Uni] ; Tatiana Mironenko [Royaume-Uni] ; Rachel Turner [Royaume-Uni] ; Kelly Turrell [Royaume-Uni] ; Jennifer Varian [Royaume-Uni] ; Sofie West [Royaume-Uni] ; Sara Widaa [Royaume-Uni] ; Paul Wray [Royaume-Uni] ; Jon Teague [Royaume-Uni] ; Adam Butler [Royaume-Uni] ; Andrew Jenkinson [Royaume-Uni] ; MINGMING JIA [Royaume-Uni] ; David Richardson [Royaume-Uni] ; Rebecca Shepherd [Royaume-Uni] ; Richard Wooster [Royaume-Uni] ; M. Isabel Tejada [Espagne] ; Francisco Martinez [Espagne] ; Gemma Carvill [Afrique du Sud] ; Rene Goliath [Afrique du Sud] ; Arjan P. M. De Brouwer [Pays-Bas] ; Hans Van Bokhoven [Pays-Bas] ; Hilde Van Esch [Belgique] ; Jamel Chelly [France] ; Martine Raynaud [France] ; Hans-Hilger Ropers [Allemagne] ; Fatima E. Abidi [États-Unis] ; Anand K. Srivastava [États-Unis] ; James Cox [Royaume-Uni] ; YING LUO [Royaume-Uni] ; Uma Mallya [Royaume-Uni] ; Jenny Moon [Royaume-Uni] ; Josef Parnau [Royaume-Uni] ; Shehla Mohammed [Royaume-Uni] ; John L. Tolmie [Royaume-Uni] ; Cheryl Shoubridge [Australie]

Source :

RBID : Pascal:09-0232260

Descripteurs français

English descriptors

Abstract

Large-scale systematic resequencing has been proposed as the key future strategy for the discovery of rare, disease-causing sequence variants across the spectrum of human complex disease. We have sequenced the coding exons of the X chromosome in 208 families with X-linked mental retardation (XLMR), the largest direct screen for constitutional disease-causing mutations thus far reported. The screen has discovered nine genes implicated in XLMR, including SYP, ZNF711 and CASK reported here, confirming the power of this strategy. The study has, however, also highlighted issues confronting whole-genome sequencing screens, including the observation that loss of function of 1 % or more of X-chromosome genes is compatible with apparently normal existence.

Url:


Affiliations:


Links toward previous steps (curation, corpus...)


Le document en format XML

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<name sortKey="Turner, Rachel" sort="Turner, Rachel" uniqKey="Turner R" first="Rachel" last="Turner">Rachel Turner</name>
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<name sortKey="Turrell, Kelly" sort="Turrell, Kelly" uniqKey="Turrell K" first="Kelly" last="Turrell">Kelly Turrell</name>
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<name sortKey="Varian, Jennifer" sort="Varian, Jennifer" uniqKey="Varian J" first="Jennifer" last="Varian">Jennifer Varian</name>
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<name sortKey="West, Sofie" sort="West, Sofie" uniqKey="West S" first="Sofie" last="West">Sofie West</name>
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<name sortKey="Wray, Paul" sort="Wray, Paul" uniqKey="Wray P" first="Paul" last="Wray">Paul Wray</name>
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<name sortKey="Teague, Jon" sort="Teague, Jon" uniqKey="Teague J" first="Jon" last="Teague">Jon Teague</name>
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<name sortKey="Butler, Adam" sort="Butler, Adam" uniqKey="Butler A" first="Adam" last="Butler">Adam Butler</name>
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<name sortKey="Mingming Jia" sort="Mingming Jia" uniqKey="Mingming Jia" last="Mingming Jia">MINGMING JIA</name>
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<name sortKey="Richardson, David" sort="Richardson, David" uniqKey="Richardson D" first="David" last="Richardson">David Richardson</name>
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<name sortKey="Wooster, Richard" sort="Wooster, Richard" uniqKey="Wooster R" first="Richard" last="Wooster">Richard Wooster</name>
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<country>Royaume-Uni</country>
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<author>
<name sortKey="West, Sofie" sort="West, Sofie" uniqKey="West S" first="Sofie" last="West">Sofie West</name>
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<author>
<name sortKey="Widaa, Sara" sort="Widaa, Sara" uniqKey="Widaa S" first="Sara" last="Widaa">Sara Widaa</name>
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<author>
<name sortKey="Wray, Paul" sort="Wray, Paul" uniqKey="Wray P" first="Paul" last="Wray">Paul Wray</name>
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<s1>Wellcome Trust Sanger Institute</s1>
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<author>
<name sortKey="Teague, Jon" sort="Teague, Jon" uniqKey="Teague J" first="Jon" last="Teague">Jon Teague</name>
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<s1>Wellcome Trust Sanger Institute</s1>
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<country>Royaume-Uni</country>
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<author>
<name sortKey="Butler, Adam" sort="Butler, Adam" uniqKey="Butler A" first="Adam" last="Butler">Adam Butler</name>
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<s1>Wellcome Trust Sanger Institute</s1>
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<author>
<name sortKey="Jenkinson, Andrew" sort="Jenkinson, Andrew" uniqKey="Jenkinson A" first="Andrew" last="Jenkinson">Andrew Jenkinson</name>
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<s1>Wellcome Trust Sanger Institute</s1>
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<author>
<name sortKey="Mingming Jia" sort="Mingming Jia" uniqKey="Mingming Jia" last="Mingming Jia">MINGMING JIA</name>
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<s1>Wellcome Trust Sanger Institute</s1>
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<country>Royaume-Uni</country>
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<author>
<name sortKey="Richardson, David" sort="Richardson, David" uniqKey="Richardson D" first="David" last="Richardson">David Richardson</name>
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<inist:fA14 i1="04">
<s1>Wellcome Trust Sanger Institute</s1>
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<author>
<name sortKey="Shepherd, Rebecca" sort="Shepherd, Rebecca" uniqKey="Shepherd R" first="Rebecca" last="Shepherd">Rebecca Shepherd</name>
<affiliation wicri:level="1">
<inist:fA14 i1="04">
<s1>Wellcome Trust Sanger Institute</s1>
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<country>Royaume-Uni</country>
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<author>
<name sortKey="Wooster, Richard" sort="Wooster, Richard" uniqKey="Wooster R" first="Richard" last="Wooster">Richard Wooster</name>
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<inist:fA14 i1="04">
<s1>Wellcome Trust Sanger Institute</s1>
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<country>Royaume-Uni</country>
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</affiliation>
</author>
<author>
<name sortKey="Tejada, M Isabel" sort="Tejada, M Isabel" uniqKey="Tejada M" first="M. Isabel" last="Tejada">M. Isabel Tejada</name>
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<inist:fA14 i1="05">
<s1>Molecular Genetics Laboratory, Hospital de Cruces</s1>
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</inist:fA14>
<country>Espagne</country>
<wicri:noRegion>Bizkaia</wicri:noRegion>
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</author>
<author>
<name sortKey="Martinez, Francisco" sort="Martinez, Francisco" uniqKey="Martinez F" first="Francisco" last="Martinez">Francisco Martinez</name>
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<inist:fA14 i1="06">
<s1>Unidad de Genética y Diagnóstico Prenatal, Hospital Universitario La Fe, Av/Campanar</s1>
<s2>Valencia</s2>
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</inist:fA14>
<country>Espagne</country>
<wicri:noRegion>Valencia</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Carvill, Gemma" sort="Carvill, Gemma" uniqKey="Carvill G" first="Gemma" last="Carvill">Gemma Carvill</name>
<affiliation wicri:level="1">
<inist:fA14 i1="07">
<s1>MRC Human Genetics Research Unit, Faculty of Health Sciences, University of Cape Town</s1>
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</inist:fA14>
<country>Afrique du Sud</country>
<wicri:noRegion>MRC Human Genetics Research Unit, Faculty of Health Sciences, University of Cape Town</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Goliath, Rene" sort="Goliath, Rene" uniqKey="Goliath R" first="Rene" last="Goliath">Rene Goliath</name>
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<inist:fA14 i1="07">
<s1>MRC Human Genetics Research Unit, Faculty of Health Sciences, University of Cape Town</s1>
<s3>ZAF</s3>
<sZ>41 aut.</sZ>
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</inist:fA14>
<country>Afrique du Sud</country>
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</affiliation>
</author>
<author>
<name sortKey="De Brouwer, Arjan P M" sort="De Brouwer, Arjan P M" uniqKey="De Brouwer A" first="Arjan P. M." last="De Brouwer">Arjan P. M. De Brouwer</name>
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<inist:fA14 i1="08">
<s1>Department of Human Genetics, Radboud University Nijmegen Medical Centre</s1>
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<sZ>44 aut.</sZ>
</inist:fA14>
<country>Pays-Bas</country>
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<settlement type="city">Nimègue</settlement>
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<author>
<name sortKey="Van Bokhoven, Hans" sort="Van Bokhoven, Hans" uniqKey="Van Bokhoven H" first="Hans" last="Van Bokhoven">Hans Van Bokhoven</name>
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<inist:fA14 i1="08">
<s1>Department of Human Genetics, Radboud University Nijmegen Medical Centre</s1>
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</inist:fA14>
<country>Pays-Bas</country>
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<settlement type="city">Nimègue</settlement>
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<author>
<name sortKey="Van Esch, Hilde" sort="Van Esch, Hilde" uniqKey="Van Esch H" first="Hilde" last="Van Esch">Hilde Van Esch</name>
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<inist:fA14 i1="09">
<s1>Center for Human Genetics, University Hospital Leuven</s1>
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</inist:fA14>
<country>Belgique</country>
<wicri:noRegion>Leuven</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Chelly, Jamel" sort="Chelly, Jamel" uniqKey="Chelly J" first="Jamel" last="Chelly">Jamel Chelly</name>
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<inist:fA14 i1="10">
<s1>Université Paris Descartes; Institut Cochin; INSERM Unité 567; CNRS UMR 8104</s1>
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</inist:fA14>
<country>France</country>
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<region type="region">Île-de-France</region>
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<author>
<name sortKey="Raynaud, Martine" sort="Raynaud, Martine" uniqKey="Raynaud M" first="Martine" last="Raynaud">Martine Raynaud</name>
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<s1>INSERM, U930; Centre Hospitalier Régional Universitaire de Tours, Service de Génétique</s1>
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<country>France</country>
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<region type="region">Centre-Val de Loire</region>
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<author>
<name sortKey="Ropers, Hans Hilger" sort="Ropers, Hans Hilger" uniqKey="Ropers H" first="Hans-Hilger" last="Ropers">Hans-Hilger Ropers</name>
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<s1>Department of Human Molecular Genetics, Max Planck Institute for Molecular Genetics</s1>
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</inist:fA14>
<country>Allemagne</country>
<wicri:noRegion>Berlin-Dahlem</wicri:noRegion>
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</author>
<author>
<name sortKey="Abidi, Fatima E" sort="Abidi, Fatima E" uniqKey="Abidi F" first="Fatima E." last="Abidi">Fatima E. Abidi</name>
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<s1>JC Self Research Institute of Human Genetics, Greenwood Genetic Center</s1>
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</inist:fA14>
<country>États-Unis</country>
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<region type="state">Caroline du Sud</region>
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<author>
<name sortKey="Srivastava, Anand K" sort="Srivastava, Anand K" uniqKey="Srivastava A" first="Anand K." last="Srivastava">Anand K. Srivastava</name>
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<s1>JC Self Research Institute of Human Genetics, Greenwood Genetic Center</s1>
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<region type="state">Caroline du Sud</region>
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<author>
<name sortKey="Cox, James" sort="Cox, James" uniqKey="Cox J" first="James" last="Cox">James Cox</name>
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<inist:fA14 i1="02">
<s1>Cambridge Institute of Medical Research</s1>
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<country>Royaume-Uni</country>
<wicri:noRegion>Cambridge Institute of Medical Research</wicri:noRegion>
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<author>
<name sortKey="Ying Luo" sort="Ying Luo" uniqKey="Ying Luo" last="Ying Luo">YING LUO</name>
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<inist:fA14 i1="02">
<s1>Cambridge Institute of Medical Research</s1>
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<country>Royaume-Uni</country>
<wicri:noRegion>Cambridge Institute of Medical Research</wicri:noRegion>
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</author>
<author>
<name sortKey="Mallya, Uma" sort="Mallya, Uma" uniqKey="Mallya U" first="Uma" last="Mallya">Uma Mallya</name>
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<s1>Cambridge Institute of Medical Research</s1>
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<sZ>53 aut.</sZ>
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<country>Royaume-Uni</country>
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<author>
<name sortKey="Moon, Jenny" sort="Moon, Jenny" uniqKey="Moon J" first="Jenny" last="Moon">Jenny Moon</name>
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<s1>Cambridge Institute of Medical Research</s1>
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<sZ>52 aut.</sZ>
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<sZ>54 aut.</sZ>
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<country>Royaume-Uni</country>
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<author>
<name sortKey="Parnau, Josef" sort="Parnau, Josef" uniqKey="Parnau J" first="Josef" last="Parnau">Josef Parnau</name>
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<s1>Cambridge Institute of Medical Research</s1>
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<author>
<name sortKey="Mohammed, Shehla" sort="Mohammed, Shehla" uniqKey="Mohammed S" first="Shehla" last="Mohammed">Shehla Mohammed</name>
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<s1>Guy's Hospital, Great Maze Pond</s1>
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<settlement type="city">Londres</settlement>
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<author>
<name sortKey="Tolmie, John L" sort="Tolmie, John L" uniqKey="Tolmie J" first="John L." last="Tolmie">John L. Tolmie</name>
<affiliation wicri:level="1">
<inist:fA14 i1="15">
<s1>Institute of Medical Genetics, Yorkhill Hospital</s1>
<s2>Glasgow</s2>
<s3>GBR</s3>
<sZ>57 aut.</sZ>
</inist:fA14>
<country>Royaume-Uni</country>
<wicri:noRegion>Glasgow</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Shoubridge, Cheryl" sort="Shoubridge, Cheryl" uniqKey="Shoubridge C" first="Cheryl" last="Shoubridge">Cheryl Shoubridge</name>
<affiliation wicri:level="1">
<inist:fA14 i1="16">
<s1>SA Pathology, Women's and Children's Hospital</s1>
<s2>North Adelaide, South Australia</s2>
<s3>AUS</s3>
<sZ>58 aut.</sZ>
</inist:fA14>
<country>Australie</country>
<wicri:noRegion>North Adelaide, South Australia</wicri:noRegion>
</affiliation>
</author>
</analytic>
<series>
<title level="j" type="main">Nature genetics</title>
<title level="j" type="abbreviated">Nat. genet.</title>
<idno type="ISSN">1061-4036</idno>
<imprint>
<date when="2009">2009</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
<seriesStmt>
<title level="j" type="main">Nature genetics</title>
<title level="j" type="abbreviated">Nat. genet.</title>
<idno type="ISSN">1061-4036</idno>
</seriesStmt>
</fileDesc>
<profileDesc>
<textClass>
<keywords scheme="KwdEn" xml:lang="en">
<term>Exon</term>
<term>Mental retardation</term>
<term>X-Chromosome</term>
</keywords>
<keywords scheme="Pascal" xml:lang="fr">
<term>Chromosome X</term>
<term>Exon</term>
<term>Arriération mentale</term>
</keywords>
</textClass>
</profileDesc>
</teiHeader>
<front>
<div type="abstract" xml:lang="en">Large-scale systematic resequencing has been proposed as the key future strategy for the discovery of rare, disease-causing sequence variants across the spectrum of human complex disease. We have sequenced the coding exons of the X chromosome in 208 families with X-linked mental retardation (XLMR), the largest direct screen for constitutional disease-causing mutations thus far reported. The screen has discovered nine genes implicated in XLMR, including SYP, ZNF711 and CASK reported here, confirming the power of this strategy. The study has, however, also highlighted issues confronting whole-genome sequencing screens, including the observation that loss of function of 1 % or more of X-chromosome genes is compatible with apparently normal existence.</div>
</front>
</TEI>
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<li>Afrique du Sud</li>
<li>Allemagne</li>
<li>Australie</li>
<li>Belgique</li>
<li>Espagne</li>
<li>France</li>
<li>Pays-Bas</li>
<li>Royaume-Uni</li>
<li>États-Unis</li>
</country>
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<li>Angleterre</li>
<li>Caroline du Sud</li>
<li>Centre-Val de Loire</li>
<li>Grand Londres</li>
<li>Gueldre</li>
<li>Région Centre</li>
<li>Île-de-France</li>
</region>
<settlement>
<li>Londres</li>
<li>Nimègue</li>
<li>Paris</li>
<li>Tours</li>
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<name sortKey="De Brouwer, Arjan P M" sort="De Brouwer, Arjan P M" uniqKey="De Brouwer A" first="Arjan P. M." last="De Brouwer">Arjan P. M. De Brouwer</name>
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